diff --git a/R/runAllChunks.R b/R/runAllChunks.R index be75bd0d1208274a2a6b7f048c40dfec2bdbf430..f7b974a910d2b6162bd167086cdab0e794c7eec1 100644 --- a/R/runAllChunks.R +++ b/R/runAllChunks.R @@ -3,13 +3,12 @@ #' @name runAllChunks #' #' @description This function was developed to run all chunks in a knitr -#' Rmd (R markdown) file at once. Mainly for exploring and debugging -#' purposes. +#' Rmd (R markdown) file at once. Mainly for exploring and debugging +#' purposes. #' #' @param Rmd the name of the Rmd file. -#' #' @param envir the environment in which the chunks will be -#' evaluated. By default it is the GlobalEnv. +#' evaluated. By default it is the GlobalEnv. #' #' @references This function was based on this #' \href{http://stackoverflow.com/questions/24753969/knitr-run-all-chunks-in-an-rmarkdown-document}{SO @@ -27,6 +26,6 @@ runAllChunks <- function(Rmd, envir = globalenv()){ } tempR <- tempfile(tmpdir = ".", fileext = ".R") on.exit(unlink(tempR)) - purl(Rmd, output = tempR) + knitr::purl(Rmd, output = tempR) sys.source(tempR, envir = envir) }