From e2392d917a60d5ef253dc35669a81b80154401ce Mon Sep 17 00:00:00 2001
From: Pedro Folloni Pesserl <fpesserl7@gmail.com>
Date: Fri, 24 Feb 2023 10:32:21 -0300
Subject: [PATCH] tshell: p3: add sed command
---
.gitignore | 3 +--
tshell/tshell_p3.sh | 25 +++++++++++++++++++++----
2 files changed, 22 insertions(+), 6 deletions(-)
diff --git a/.gitignore b/.gitignore
index 2599fc8..383975b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,2 @@
./nomes-de-bebes/
-./PubMed/
-./Sinonimos/
+./tshell/temp/
diff --git a/tshell/tshell_p3.sh b/tshell/tshell_p3.sh
index f1dbb90..8356078 100755
--- a/tshell/tshell_p3.sh
+++ b/tshell/tshell_p3.sh
@@ -35,7 +35,24 @@ CSV=$2
confere_arq_saida $CSV
CSV=$(realpath $CSV)
-# separar os campos necessários do arquivo xml.gz
-# zcat $XML | xgrep -tx "//PMID|//ArticleTitle|//Abstract|//MeshHeadingList"
-
-
+# separar os campos úteis do arquivo xml.gz
+zcat $XML | \
+ xgrep -tx "//PMID|//ArticleTitle|//Abstract|//MeshHeadingList" | \
+ # o sed acha um campo PMID, seguido de um campo ArticleTitle, seguido
+ # de um campo Abstract, e imprime. Se houver um campo MeshHeadingList
+ # após o Abstract, imprime também.
+ sed -En '
+ /<PMID/{
+ N;
+ /<ArticleTitle>/{
+ N;
+ /<Abstract>/{
+ p;
+ n;
+ /<MeshHeadingList>/{
+ p;
+ }
+ }
+ }
+ }' >> $CSV
+# grep 'PMID' ARQUIVO_COM_CAMPOS_SEPARADOS | awk '{ print substr($0, 16, length($0)-22) }' | sed 's/">//'
--
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