Merge branch 'feature/3' into 'master'

Feature/3

Please review English. Run `check()` and `build()`. Run the examples `loessGui` documentation and suggest improvements.

See merge request !7

NAMESPACE

 # Generated by roxygen2 (4.1.1): do not edit by hand
 
 export(biasBox)
+export(loessGui)
 export(polyGui)
 export(subsetDropAll)
 export(twoStripCombined)

R/loessGui.R

+#' @title Loess regression GUI
+#'
+#' @name loessGui
+#'
+#' @description This function opens an interface to control the settings
+#' of a loess regression:
+#' \itemize{
+#'     \item degree choose the local polynomial degree with a radio
+#' selector;
+#'     \item span set the span value that controls the degree of
+#' smoothing;
+#'     \item center move the x value to be predicted;
+#' }
+#'
+#' The elements of the interface change a plot that shows the observed
+#' values and the corresponding fitted curve superimposed with
+#' confidence bands (for the fitted values). It assumes that
+#' \code{gWidgets} and \code{gWidgetstcltk} packages are available.
+#'
+#' @param x,y independent and dependent (numeric) regression variables.
+#'
+#' @param data an optional \code{data.frame}.
+#'
+#' @param er stands for extend range. It is used to extend the plotting
+#' range by a fraction on both sides and directions. Default is
+#' 0.05. See \link[grDevices]{extendrange}.
+#'
+#' @return None is returned by the function, only a GUI is opened.
+#'
+#' @import gWidgets gWidgetstcltk
+#'
+#' @author Walmes Zeviani, \email{walmes@@ufpr.br}
+#'
+#' @export
+#' @examples
+#' \donttest{
+#'
+#' library(gWidgets)
+#' library(gWidgetstcltk)
+#' 
+#' loessGui(x=area, y=peri, data=rock, er=0.3)
+#' loessGui(x=speed, y=dist, data=cars, er=0.3)
+#' loessGui(x=eruptions, y=waiting, data=faithful, er=0.3)
+#'
+#' }
+loessGui <- function(x, y, data, er=0.05){
+    ##
+    ##-------------------------------------------
+    ## Loading the required packages.
+    ##
+    if (!requireNamespace("gWidgets", quietly=TRUE)){
+        stop("`gWidgets` needed for this function to work. Please install it.",
+             call.=FALSE)
+    }
+    if (!requireNamespace("gWidgetstcltk", quietly=TRUE)){
+        stop("`gWidgetstcltk` needed for this function to work. Please install it.",
+             call.=FALSE)
+    }
+    options(guiToolkit="tcltk")
+    ##
+    ##-------------------------------------------
+    ## Auxiliary variables not controled by the GUI.
+    ##
+    xlab <- deparse(substitute(x))
+    ylab <- deparse(substitute(y))
+    if(!missing(data)){
+        da <- eval(data, envir=parent.frame())
+        x <- da[, deparse(substitute(x))]
+        y <- da[, deparse(substitute(y))]
+    }
+    xl <- range(x)
+    nx <- length(x)
+    erx <- extendrange(xl, f=er)
+    ery <- extendrange(y, f=er)
+    newdata <- data.frame(x=seq(erx[1], erx[2], length.out=200))
+    ##
+    ##-------------------------------------------
+    ## Functions to annotate in the plot upper margin.
+    ##
+    annotations <- function(m0, y){
+        mtext(side=3, adj=0, line=1.5,
+              text=sprintf("H trace: %0.2f", m0$trace.hat))
+        mtext(side=3, adj=0, line=0.5,
+              text=sprintf("Equivalent num. param.: %0.2f", m0$enp))
+        r2 <- 100*cor(fitted(m0), y)^2
+        mtext(side=3, adj=1, line=1.5,
+              text=sprintf("R^2: %0.2f", r2))
+    }
+    ##
+    ##-------------------------------------------
+    ## Functions to adjust 0 order, 1 and 2 local polynomial regression
+    ## model.
+    ##
+    f0 <- function(w, xl){
+        y.pred <- sum(w*y)/sum(w)
+        segments(xl[1], y.pred, xl[2], y.pred, col=2)
+    }
+    f1 <- function(w, xl){
+        m <- lm(y~poly(x, degree=1), weights=w)
+        y.pred <- predict(m, newdata=list(x=xl))
+        segments(xl[1], y.pred[1], xl[2], y.pred[2], col=2)
+    }
+    f2 <- function(w, xl){
+        m <- lm(y~poly(x, degree=2), weights=w)
+        x.pred <- seq(xl[1], xl[2], length.out=20)
+        y.pred <- predict(m, newdata=list(x=x.pred))
+        lines(x.pred, y.pred, col=2)
+    }
+    ##
+    ##-------------------------------------------
+    ## Reactive function.
+    ##
+    draw.loess <- function(...){
+        ##
+        ##-------------------------------------------
+        ## Fit loess regression.
+        ## 
+        m0 <- loess(formula=y~x,
+                    span=svalue(SPAN),
+                    degree=as.integer(svalue(DEGREE)),
+                    family="gaussian")
+        ##
+        ##-------------------------------------------
+        ## Predicted values with confidence bands.
+        ## 
+        pred <- predict(m0, newdata=newdata, se=TRUE)
+        pred$me <- pred$se.fit*1.96
+        pred$ci <- sweep(x=cbind(fit=0, lwr=-pred$me, upr=pred$me),
+                         MARGIN=1, STATS=pred$fit, FUN="+")
+        ##
+        ##-------------------------------------------
+        ## Weights to be used in local polynomial.
+        ## 
+        x0 <- svalue(XCENTER)
+        sp <- svalue(SPAN)
+        a <- abs(x-x0)
+        if (sp < 1){
+            q <- as.integer(sp*nx)
+            d <- sort(a)[q]
+        } else {
+            q <- nx
+            d <- max(abs(a))*sqrt(sp)
+        }
+        s <- a <= d
+        w <- rep(0, nx)
+        w[s] <- (1-(a[s]/d)^3)^3
+        ##
+        ##-------------------------------------------
+        ## Scatter plot, point size proportional to weight.
+        ## 
+        i <- as.integer(s)
+        plot(x, y,
+             pch=2*(!s)+1, cex=i*3*w+1,
+             xlim=erx, ylim=ery)
+        ##
+        ##-------------------------------------------
+        ## Local polynomial.
+        ##
+        xl[1] <- ifelse(x0 - d>xl[1], x0-d, xl[1])
+        xl[2] <- ifelse(x0 + d<xl[2], x0+d, xl[2])
+        matlines(x=newdata$x, y=pred$ci, lty=c(1,2,2), col=1)
+        abline(v=c(x0, xl), lty=c(2,3,3))
+        annotations(m0, y)
+        mtext(side=3, adj=1, line=0.5,
+              text=sprintf("Number of obs. used/total: %i/%i",
+                  sum(s), nx))
+        ## NOTE: usar action aqui!
+        ## xl <- c(min(c(xl[1], x0)), max(c(x0, xl[2])))
+        do.call(what=paste0("f", svalue(DEGREE)),
+                args=list(w=w, xl=xl))
+    }
+    ##
+    ##-------------------------------------------
+    ## Building the GUI.
+    ##
+    WDW <- gwindow(title="LOESS regression", visible=FALSE)
+    GG <- ggroup(container=WDW, expand=TRUE, horizontal=FALSE)
+    GF_DG <- gframe(text="Local polynomial degree:", container=GG)
+    DEGREE <- gradio(items=0:2, selected=2L, horizontal=TRUE,
+                     handler=draw.loess,
+                     container=GF_DG)
+    GF_XC <- gframe(text="Predicted point:", expand=TRUE, container=GG)
+    XCENTER <- gslider(from=erx[1], to=erx[2],
+                       value=mean(erx),
+                       length.out=51,
+                       handler=draw.loess,
+                       expand=TRUE,
+                       container=GF_XC)
+    XCLABEL <- glabel(text=sprintf("%0.2f", svalue(XCENTER)),
+                      container=GF_XC)
+    addHandlerChanged(XCENTER,
+                      action=XCLABEL,
+                      handler=function(h, ...){
+                          svalue(h$action) <-
+                              sprintf("%0.2f", svalue(h$obj))
+                      })
+    GF_SP <- gframe(text="Span:", expand=TRUE,container=GG)
+    SPAN <- gslider(from=0, to=1.5,
+                    value=0.75, by=0.05,
+                    handler=draw.loess,
+                    expand=TRUE,
+                    container=GF_SP)
+    SPLABEL <- glabel(text=sprintf("%0.2f", svalue(SPAN)),
+                      container=GF_SP)
+    addHandlerChanged(SPAN,
+                      action=SPLABEL,
+                      handler=function(h, ...){
+                          svalue(h$action) <-
+                              sprintf("%0.2f", svalue(h$obj))
+                      })
+    ##-------------------------------------------
+    ## Initializing.
+    svalue(SPAN) <- 0.75
+    svalue(DEGREE) <- 1L
+    svalue(XCENTER) <- mean(erx)
+    do.call(what=draw.loess, args=list(NA))
+    visible(WDW) <- TRUE
+}

man/loessGui.Rd

+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/loessGui.R
+\name{loessGui}
+\alias{loessGui}
+\title{Loess regression GUI}
+\usage{
+loessGui(x, y, data, er = 0.05)
+}
+\arguments{
+\item{x,y}{independent and dependent (numeric) regression variables.}
+
+\item{data}{an optional \code{data.frame}.}
+
+\item{er}{stands for extend range. It is used to extend the plotting
+range by a fraction on both sides and directions. Default is
+0.05. See \link[grDevices]{extendrange}.}
+}
+\value{
+None is returned by the function, only a GUI is opened.
+}
+\description{
+This function opens an interface to control the settings
+of a loess regression:
+\itemize{
+    \item degree choose the local polynomial degree with a radio
+selector;
+    \item span set the span value that controls the degree of
+smoothing;
+    \item center move the x value to be predicted;
+}
+
+The elements of the interface change a plot that shows the observed
+values and the corresponding fitted curve superimposed with
+confidence bands (for the fitted values). It assumes that
+\code{gWidgets} and \code{gWidgetstcltk} packages are available.
+}
+\examples{
+\donttest{
+
+library(gWidgets)
+library(gWidgetstcltk)
+
+loessGui(x=area, y=peri, data=rock, er=0.3)
+loessGui(x=speed, y=dist, data=cars, er=0.3)
+loessGui(x=eruptions, y=waiting, data=faithful, er=0.3)
+
+}
+}
+\author{
+Walmes Zeviani, \email{walmes@ufpr.br}
+}
+